Index

_ | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W

_

__deepcopy__() (bluepyopt.deapext.optimisations.WeightedSumFitness method)
__getitem__() (bluepyopt.ephys.responses.TimeVoltageResponse method)
__missing__() (bluepyopt.ephys.parameterscalers.MissingFormatDict method)
__str__() (bluepyopt.ephys.efeatures.eFELFeature method)
(bluepyopt.ephys.locations.NrnPointProcessLocation method)
(bluepyopt.ephys.locations.NrnSeclistCompLocation method)
(bluepyopt.ephys.locations.NrnSeclistLocation method)
(bluepyopt.ephys.locations.NrnSeclistSecLocation method)
(bluepyopt.ephys.locations.NrnSomaDistanceCompLocation method)
(bluepyopt.ephys.mechanisms.NrnMODMechanism method)
(bluepyopt.ephys.mechanisms.NrnMODPointProcessMechanism method)
(bluepyopt.ephys.models.CellModel method)
(bluepyopt.ephys.models.HocCellModel method)
(bluepyopt.ephys.morphologies.NrnFileMorphology method)
(bluepyopt.ephys.objectives.SingletonObjective method)
(bluepyopt.ephys.parameters.MetaParameter method)
(bluepyopt.ephys.parameters.NrnGlobalParameter method)
(bluepyopt.ephys.parameters.NrnPointProcessParameter method)
(bluepyopt.ephys.parameters.NrnRangeParameter method)
(bluepyopt.ephys.parameters.NrnSectionParameter method)
(bluepyopt.ephys.parameterscalers.NrnSegmentLinearScaler method)
(bluepyopt.ephys.parameterscalers.NrnSegmentSomaDistanceScaler method)
(bluepyopt.ephys.protocols.SweepProtocol method)
(bluepyopt.ephys.recordings.CompRecording method)
(bluepyopt.ephys.stimuli.NrnCurrentPlayStimulus method)
(bluepyopt.ephys.stimuli.NrnNetStimStimulus method)
(bluepyopt.ephys.stimuli.NrnRampPulse method)
(bluepyopt.ephys.stimuli.NrnSquarePulse method)

B

bluepyopt.deapext.optimisations (module)
bluepyopt.ephys.efeatures (module)
bluepyopt.ephys.evaluators (module)
bluepyopt.ephys.locations (module)
bluepyopt.ephys.mechanisms (module)
bluepyopt.ephys.models (module)
bluepyopt.ephys.morphologies (module)
bluepyopt.ephys.objectives (module)
bluepyopt.ephys.objectivescalculators (module)
bluepyopt.ephys.parameters (module)
bluepyopt.ephys.parameterscalers (module)
bluepyopt.ephys.protocols (module)
bluepyopt.ephys.recordings (module)
bluepyopt.ephys.responses (module)
bluepyopt.ephys.stimuli (module)
bluepyopt.evaluators (module)
bluepyopt.objectives (module)
bluepyopt.optimisations (module)
bluepyopt.parameters (module)

C

calculate_feature() (bluepyopt.ephys.efeatures.eFELFeature method)
calculate_feature_scores() (bluepyopt.ephys.objectives.EFeatureObjective method)
calculate_score() (bluepyopt.ephys.efeatures.eFELFeature method)
(bluepyopt.ephys.objectives.MaxObjective method)
(bluepyopt.ephys.objectives.SingletonObjective method)
(bluepyopt.ephys.objectives.WeightedSumObjective method)
calculate_scores() (bluepyopt.ephys.objectivescalculators.ObjectivesCalculator method)
CellEvaluator (class in bluepyopt.ephys.evaluators)
CellModel (class in bluepyopt.ephys.models)
check_bounds() (bluepyopt.parameters.Parameter method)
check_name() (bluepyopt.ephys.models.CellModel method)
check_nonfrozen_params() (bluepyopt.ephys.models.CellModel method)
CompRecording (class in bluepyopt.ephys.recordings)
create_empty_cell() (bluepyopt.ephys.models.CellModel static method)
create_empty_template() (bluepyopt.ephys.models.CellModel static method)
create_hoc() (bluepyopt.ephys.models.CellModel method)

D

DEAPOptimisation (class in bluepyopt.deapext.optimisations)
destroy() (bluepyopt.ephys.mechanisms.NrnMODMechanism method)
(bluepyopt.ephys.mechanisms.NrnMODPointProcessMechanism method)
(bluepyopt.ephys.models.CellModel method)
(bluepyopt.ephys.models.Model method)
(bluepyopt.ephys.morphologies.NrnFileMorphology method)
(bluepyopt.ephys.parameters.NrnParameter method)
(bluepyopt.ephys.protocols.SweepProtocol method)
(bluepyopt.ephys.recordings.CompRecording method)
(bluepyopt.ephys.stimuli.NrnCurrentPlayStimulus method)
(bluepyopt.ephys.stimuli.NrnNetStimStimulus method)
(bluepyopt.ephys.stimuli.NrnRampPulse method)
(bluepyopt.ephys.stimuli.NrnSquarePulse method)

E

EFeature (class in bluepyopt.ephys.efeatures)
EFeatureObjective (class in bluepyopt.ephys.objectives)
eFELFeature (class in bluepyopt.ephys.efeatures)
EPhysLocInstantiateException
eval_dist() (bluepyopt.ephys.parameterscalers.NrnSegmentSomaDistanceScaler method)
evaluate() (bluepyopt.ephys.evaluators.CellEvaluator method)
evaluate_with_dicts() (bluepyopt.ephys.evaluators.CellEvaluator method)
(bluepyopt.evaluators.Evaluator method)
evaluate_with_lists() (bluepyopt.ephys.evaluators.CellEvaluator method)
(bluepyopt.evaluators.Evaluator method)
Evaluator (class in bluepyopt.evaluators)

F

format_float() (in module bluepyopt.ephys.parameterscalers)
freeze() (bluepyopt.ephys.models.CellModel method)
(bluepyopt.parameters.Parameter method)

G

generate_reinitrng_hoc_block() (bluepyopt.ephys.mechanisms.NrnMODMechanism method)
get_template_name() (bluepyopt.ephys.models.HocCellModel static method)

H

hash_hoc() (bluepyopt.ephys.mechanisms.NrnMODMechanism static method)
hash_py() (bluepyopt.ephys.mechanisms.NrnMODMechanism static method)
HocCellModel (class in bluepyopt.ephys.models)
HocMorphology (class in bluepyopt.ephys.models)

I

IBEADEAPOptimisation (class in bluepyopt.deapext.optimisations)
inst_distribution (bluepyopt.ephys.parameterscalers.NrnSegmentSomaDistanceScaler attribute)
instantiate() (bluepyopt.ephys.locations.NrnPointProcessLocation method)
(bluepyopt.ephys.locations.NrnSeclistCompLocation method)
(bluepyopt.ephys.locations.NrnSeclistLocation method)
(bluepyopt.ephys.locations.NrnSeclistSecLocation method)
(bluepyopt.ephys.locations.NrnSomaDistanceCompLocation method)
(bluepyopt.ephys.mechanisms.NrnMODMechanism method)
(bluepyopt.ephys.mechanisms.NrnMODPointProcessMechanism method)
(bluepyopt.ephys.models.CellModel method)
(bluepyopt.ephys.models.Model method)
(bluepyopt.ephys.morphologies.NrnFileMorphology method)
(bluepyopt.ephys.parameters.NrnGlobalParameter method)
(bluepyopt.ephys.parameters.NrnParameter method)
(bluepyopt.ephys.parameters.NrnPointProcessParameter method)
(bluepyopt.ephys.parameters.NrnRangeParameter method)
(bluepyopt.ephys.parameters.NrnSectionParameter method)
(bluepyopt.ephys.protocols.SweepProtocol method)
(bluepyopt.ephys.recordings.CompRecording method)
(bluepyopt.ephys.stimuli.NrnCurrentPlayStimulus method)
(bluepyopt.ephys.stimuli.NrnNetStimStimulus method)
(bluepyopt.ephys.stimuli.NrnRampPulse method)
(bluepyopt.ephys.stimuli.NrnSquarePulse method)
instantiate_determinism() (bluepyopt.ephys.mechanisms.NrnMODMechanism method)

L

load_hoc_template() (bluepyopt.ephys.models.HocCellModel static method)
Location (class in bluepyopt.ephys.locations)
lower_bound (bluepyopt.parameters.Parameter attribute)

M

MaxObjective (class in bluepyopt.ephys.objectives)
Mechanism (class in bluepyopt.ephys.mechanisms)
MetaParameter (class in bluepyopt.ephys.parameters)
MissingFormatDict (class in bluepyopt.ephys.parameterscalers)
Model (class in bluepyopt.ephys.models)
Morphology (class in bluepyopt.ephys.morphologies)

N

NrnCurrentPlayStimulus (class in bluepyopt.ephys.stimuli)
NrnFileMorphology (class in bluepyopt.ephys.morphologies)
NrnGlobalParameter (class in bluepyopt.ephys.parameters)
NrnMODMechanism (class in bluepyopt.ephys.mechanisms)
NrnMODPointProcessMechanism (class in bluepyopt.ephys.mechanisms)
NrnNetStimStimulus (class in bluepyopt.ephys.stimuli)
NrnParameter (class in bluepyopt.ephys.parameters)
NrnPointProcessLocation (class in bluepyopt.ephys.locations)
NrnPointProcessParameter (class in bluepyopt.ephys.parameters)
NrnRampPulse (class in bluepyopt.ephys.stimuli)
NrnRangeParameter (class in bluepyopt.ephys.parameters)
NrnSeclistCompLocation (class in bluepyopt.ephys.locations)
NrnSeclistLocation (class in bluepyopt.ephys.locations)
NrnSeclistSecLocation (class in bluepyopt.ephys.locations)
NrnSectionParameter (class in bluepyopt.ephys.parameters)
NrnSegmentLinearScaler (class in bluepyopt.ephys.parameterscalers)
NrnSegmentSomaDistanceScaler (class in bluepyopt.ephys.parameterscalers)
NrnSomaDistanceCompLocation (class in bluepyopt.ephys.locations)
NrnSquarePulse (class in bluepyopt.ephys.stimuli)

O

Objective (class in bluepyopt.objectives)
objective_dict() (bluepyopt.ephys.evaluators.CellEvaluator method)
objective_list() (bluepyopt.ephys.evaluators.CellEvaluator method)
ObjectivesCalculator (class in bluepyopt.ephys.objectivescalculators)
Optimisation (class in bluepyopt.optimisations)

P

param_dict() (bluepyopt.ephys.evaluators.CellEvaluator method)
Parameter (class in bluepyopt.parameters)
ParameterScaler (class in bluepyopt.ephys.parameterscalers)
params_by_names() (bluepyopt.ephys.models.CellModel method)
plot() (bluepyopt.ephys.responses.TimeVoltageResponse method)
prefix (bluepyopt.ephys.mechanisms.NrnMODMechanism attribute)
Protocol (class in bluepyopt.ephys.protocols)

R

read_csv() (bluepyopt.ephys.responses.TimeVoltageResponse method)
Recording (class in bluepyopt.ephys.recordings)
replace_axon() (bluepyopt.ephys.morphologies.NrnFileMorphology static method)
response (bluepyopt.ephys.recordings.CompRecording attribute)
Response (class in bluepyopt.ephys.responses)
run() (bluepyopt.deapext.optimisations.DEAPOptimisation method)
(bluepyopt.ephys.protocols.SequenceProtocol method)
(bluepyopt.ephys.protocols.SweepProtocol method)
run_protocol() (bluepyopt.ephys.evaluators.CellEvaluator method)
run_protocols() (bluepyopt.ephys.evaluators.CellEvaluator method)

S

scale() (bluepyopt.ephys.parameterscalers.NrnSegmentLinearScaler method)
(bluepyopt.ephys.parameterscalers.NrnSegmentSomaDistanceScaler method)
seed_from_param_dict() (bluepyopt.ephys.evaluators.CellEvaluator static method)
SequenceProtocol (class in bluepyopt.ephys.protocols)
set_nseg() (bluepyopt.ephys.morphologies.NrnFileMorphology static method)
setup_deap() (bluepyopt.deapext.optimisations.DEAPOptimisation method)
SingletonObjective (class in bluepyopt.ephys.objectives)
step_delay (bluepyopt.ephys.protocols.StepProtocol attribute)
step_duration (bluepyopt.ephys.protocols.StepProtocol attribute)
StepProtocol (class in bluepyopt.ephys.protocols)
Stimulus (class in bluepyopt.ephys.stimuli)
subprotocols() (bluepyopt.ephys.protocols.SequenceProtocol method)
(bluepyopt.ephys.protocols.SweepProtocol method)
sum (bluepyopt.deapext.optimisations.WeightedSumFitness attribute)
SweepProtocol (class in bluepyopt.ephys.protocols)

T

TimeVoltageResponse (class in bluepyopt.ephys.responses)
to_csv() (bluepyopt.ephys.responses.TimeVoltageResponse method)
total_duration (bluepyopt.ephys.protocols.SweepProtocol attribute)

U

unfreeze() (bluepyopt.ephys.models.CellModel method)
(bluepyopt.parameters.Parameter method)
upper_bound (bluepyopt.parameters.Parameter attribute)

V

value (bluepyopt.ephys.parameters.MetaParameter attribute)
(bluepyopt.parameters.Parameter attribute)

W

weighted_sum (bluepyopt.deapext.optimisations.WeightedSumFitness attribute)
WeightedSumFitness (class in bluepyopt.deapext.optimisations)
WeightedSumObjective (class in bluepyopt.ephys.objectives)
WSListIndividual (class in bluepyopt.deapext.optimisations)